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Changing the World through Creative Research

Valid, Plausible, and Diverse Retrosynthesis Using Tied Two-way Transformers with Latent Variables

Journal
J. Chem. Inf. Model. (Journal of Chemical Information and Modeling)
Date
2021.01.07
Abstract

Retrosynthesis is an essential task in organic chemistry to identify a synthesis pathway of newly discovered materials. With the recent advance of deep learning, there is growing attempts to solve the retrosynthesis problem through transformer models, the state-of-the-art in neural machine translation, by converting the problem into a machine translation problem. However, the vanilla transformer provides dissatisfactory results lacking grammatical validity, chemical plausibility, and diversity in reactant candidates. In this study, we propose tied two-way transformers with latent modeling to solve those problems by cycle consistency check, parameter sharing, and multinomial latent variables. Experimental results with public and in-house datasets demonstrated that the proposed model improves retrosynthesis accuracy, grammatical error, and diversity. Qualitative evaluation results further confirm its ability to suggest valid and plausible results.

Reference
J. Chem. Inf. Model. 61, 123?133 (2021)
DOI
http://dx.doi.org/10.1021/acs.jcim.0c01074